No. 2 should have 12v hooked to it. It should no go to the coil. I don't know that I would go directly to the bat., preferably to a switched 12v from the ignition switch. I thought you said you had it wired like the link said.
If you have an internally regulated alternator were did No.1 and No.2 come from?
No.1 should never be hooked to the bat..
Is the original wire harness still there? Maybe you should go back to an external regulator.
Larry