OB,
You say the block has already been prepped. Put it together and don't worry about it. On a street engine the peak pressures are too low to see any difference. I agree with your engine man. Run it. As I said previously, all my race blocks get a plate job. Most bore distortion comes from the tension of the head bolts pulling the bores "square". That is why many 'race only' engine blocks and most new generation passenger car engines use LONG head bolts / studs, anchored in the base of the block, so little distortion occurrs at or near TOP DEAD CENTER, where cylinder pressures are highest.